rs52000890 SNP Detail

Summary

• ID
  rs52000890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32698290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC CGGTTTGGCA CCCGGTTGGT
  R
  GGAGCCACGG CGACCCCGCC GCCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147954991	ENSMUSSNP1538848	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325137989	CHEV_16_32878006	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52000890					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32698290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8199	CpG island 8199	within coordinates
Fyttd1	forty-two-three domain containing 1	within coordinates
Rr404782	regulatory region 404782	within coordinates
Rr514842	regulatory region 514842	1781 bp distal
Rr514843	regulatory region 514843	165 bp distal
Rr514844	regulatory region 514844	within coordinates
Rr514845	regulatory region 514845	221 bp proximal
Rr514846	regulatory region 514846	1168 bp proximal
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	169 bp upstream
Tssr138060	transcription start site region 138060	89 bp downstream
Tssr138061	transcription start site region 138061	57 bp downstream
Tssr138062	transcription start site region 138062	26 bp downstream
Tssr138063	transcription start site region 138063	165 bp upstream
Tssr138064	transcription start site region 138064	181 bp upstream
Tssr140832	transcription start site region 140832	285 bp upstream
Tssr140833	transcription start site region 140833	246 bp upstream
Tssr140834	transcription start site region 140834	205 bp upstream
Tssr140835	transcription start site region 140835	178 bp upstream