rs52001476 SNP Detail

Summary

• ID
  rs52001476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113394138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCATTTG CTCATTCTTT
  CCCCATCTAA GACCTGTCCA CAGTAACTCG TTCTTCTCTG CACTGTCTCC TGACCTCCAG
  AAAGCTACCT TTCCTCTCAG ATCTACTCTT TTCTTCCTCA GATTTCTCAA GCCTCTCTAC
  TTCCTCATAG CTCAGGCTGC CCCTGGAGAG CTCCAAACAG AAGGTTTTTG TTGAGCCACG
  Y
  GTCACCGTGG TCCCAGTTAG CACTGTGGTG CTCCGCTTAG TCAAAACCTT GCACCAGTCA
  GAGACCACAG GGACTCTGAG GCTTAAACCT CACACTAGCC ACAGAGTATG GGTATTCTGA
  TCCCCAATCT GCCAGTCATC TCTTGAGTCA GGGACCAATG ATTTCTCTCA AAACAGTCGC
  TAAAGTTCTC GAGCCTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742436	ENSMUSSNP547137	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52001476					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113394138 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	10 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	685 bp upstream
Ighj2	immunoglobulin heavy joining 2	1003 bp upstream
Ighj3	immunoglobulin heavy joining 3	1386 bp upstream
Ighj4	immunoglobulin heavy joining 4	1951 bp upstream
Tssr115504	transcription start site region 115504	278 bp downstream
Tssr118005	transcription start site region 118005	1971 bp upstream
Tssr118006	transcription start site region 118006	1940 bp upstream
Tssr118007	transcription start site region 118007	1894 bp upstream
Tssr118008	transcription start site region 118008	1867 bp upstream
Tssr118009	transcription start site region 118009	1856 bp upstream
Tssr118010	transcription start site region 118010	1718 bp upstream
Tssr118011	transcription start site region 118011	1620 bp upstream
Tssr118012	transcription start site region 118012	1385 bp upstream
Tssr118013	transcription start site region 118013	1370 bp upstream
Tssr118014	transcription start site region 118014	1266 bp upstream
Tssr118015	transcription start site region 118015	1170 bp upstream
Tssr118016	transcription start site region 118016	1016 bp upstream
Tssr118017	transcription start site region 118017	676 bp upstream
Tssr118018	transcription start site region 118018	133 bp upstream
Tssr118019	transcription start site region 118019	77 bp upstream
Tssr118020	transcription start site region 118020	32 bp upstream
Tssr118021	transcription start site region 118021	71 bp downstream
Tssr118022	transcription start site region 118022	103 bp downstream
Tssr118023	transcription start site region 118023	268 bp downstream