rs52001733 SNP Detail

Summary

• ID
  rs52001733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127653185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTGCCAG GCCCAGTCTC
  CTCTGTGTCT GCTGCCTGAG ATTCAGATGT AAACCTTTTG CTCAACTACT GCTCCCCCAC
  TGTGCCTGTC TACTTCCCAC CATGATAACC ATGGACCAAC CTTCTAAAAC CGTAGGCAAG
  CACCGGATTC AATGTTTTAT TTTATAAGAA TTTCCTGGGT CACAGTGCTT CTTCACAGCA
  R
  TAGAACAAGA GCCAAGACAG AAATCAACGG GAAACTACAC AAATCCAACC CTGGGAGGAT
  GACAAACAGC AGAGACCCTT CAGGAATGAA GGTATGGGTC CCTCCTCCAG GGGAAGAACC
  AAGATCTGCC AAGGTGCTTG CTGAGGGTGG AGGAAACACA GAAACAGTAG AGGAGGAAGA
  TAGTTATAAC TACCAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873320	ENSMUSSNP4009256	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320957573	CHEV_3_127562454	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52001733					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127653185 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Rr584887	regulatory region 584887	1862 bp proximal