rs52003230 SNP Detail

Summary

• ID
  rs52003230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42405115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGACTGAG ATATTTTGTC
  TGTTTAGTTG GGCTGCCTTT TTATTATGTT GTACTGTCTA AAGTGTAAAA CAGTAACTCC
  AGGTTCCTTA CCATCTATCT ATCTGCTCTG CAGTCTTTGT GGGCCATTCT ACTTTGTACT
  CATGGACTAT GCAAGCATCT TGGGAGTCCA GCCTGTTTGG AAATCTTACT CACATCATTT
  Y
  GAAGAGCAAC ATACGTGGGT CCTTCTGTTA TTTGTTTTTC TCGAAGGCCT ATGCTAGAAA
  CTGACATTCA ATATCTGTCA TCATGGTTTG ATTCTTTAGC TTTCAACAGT ATATTTAGCA
  GACATCTTCC TTTTAACCCA CATACAGAAA CAAATACAAG AAGTGTTAGT GTTCTAGACA
  GGGTCTCACA CAGTCTAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61273592	NES16777575	PERLEGEN	MM_PANEL2	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs52003230					SNP	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273592	NES16777575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42405115 () rs orientation: forward

Symbol	Name	Function Class
Rr219442	regulatory region 219442	1115 bp distal
Rr219443	regulatory region 219443	1486 bp proximal
Snx3	sorting nexin 3	within coordinates