rs52003544 SNP Detail

Summary

• ID
  rs52003544
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134097918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGT TTATGGAAGT GCTATCACCC
  C
  AGTGAGCGAA TGGTATACAA ATGTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147527423	ENSMUSSNP4862641	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52003544					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134097918 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15037	CpG island 15037			373 bp proximal
Extl1	exostosin-like glycosyltransferase 1			Intron
				Noncoding-Transcript-Variant
Rr601651	regulatory region 601651			912 bp proximal
Rr601652	regulatory region 601652			1941 bp proximal
Tssr43895	transcription start site region 43895			1007 bp downstream
Tssr43896	transcription start site region 43896			1922 bp downstream
Tssr43897	transcription start site region 43897			1968 bp downstream