rs52004242 SNP Detail

Summary

• ID
  rs52004242
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:12420028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGACAGAT GTCACTGTGG
  ACAGGATGAC GAGGTTAATA ACAAAATTCT GTGCATTCTT CTTCCAGATG AAAGGCTGCA
  TAAAGGTGTT GAAGGAACAG GCCCCAGACA GTGTGGAAGG GCTCCTGAAT GCTCTCAGGT
  GAGCTTGTCT CTGGCAGAGG CTGATGGAGC GGGAGCCCTT GCAGGCCATT GCAGATGTGG
  S
  TGTTTGAGTC TGAGCACCAA CCTATCAGTC TTAGCCCTCC ACTCATTTTA ACATCACTCC
  TCTCCCTAGC AAGGTTTGGA GGTCAGCACC ATTTTTACTA TTCATTTTGT ACAGATGGGA
  GAATATGAGG CAACTTTTTT TTAAGGCGTT GGGTTTTCGA GACAGGGTGT TTCTGCATAG
  CCCTGGCTGT GCTCAAACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61349683	NES16962133	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52004242					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61349683	NES16962133	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:12420028 () rs orientation: forward

Symbol	Name	Function Class
4921511I17Rik	RIKEN cDNA 4921511I17 gene	within coordinates
Cyria	CYFIP related Rac1 interactor A	within coordinates
Rr259609	regulatory region 259609	973 bp proximal
Rr259610	regulatory region 259610	1373 bp proximal
Rr386868	regulatory region 386868	1821 bp upstream