rs52004255 SNP Detail

Summary

• ID
  rs52004255
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53766311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGTCTT GGCGTCTGCT
  TTTAAGGATC TCCTTCTTAT TCCTCCACAG TCACCTTCCA GCTCAGCCGC TGTTTATTTA
  ACCCAAACAC TCTGCCTTGT ATGGAACCTT CCAGGATTAT GCTTCTTGGG CTGCTTACAT
  CAGCTTTGGT CCCAAGGGGA CCATTCTCTC TTGTGATTAA GTCAGTGTGT GTCCTCTGTC
  C
  CTCTGATGGT GGGATGACGT TCATATCAGT ATGTTCCATG TTCCGTGTTA CTTAATTGCA
  CTTTTATTAA TGAAGTTGTA CAAATTAGTA ACTGAAGTCC TAAAGGTGTA GATATTGACA
  GCTAAACTTC TGCCCTGGTT TTTTAAAATT CACTTCTGTC TTTTCTCTCA TACAGTGTTT
  CTTGGGCCCC ATCCTCTCAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss137758479	ENSMUSSNP3407309	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52004255					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53766311 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	290 bp proximal
Rr263732	regulatory region 263732	377 bp proximal