rs52004454 SNP Detail

Summary

• ID
  rs52004454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46501835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCTGGA CAAGGCGCAA
  GCCAAGTTCT GCAGCGAGAA CGCGGCGCAG GCGCTGCACC TTGGGGAGCG CATGCAGGAG
  GCCAAGAAGC TGCTGGGCTC CCTGCAGCGT CTCTTCGACA AGACAGAGGA CGTCGGCTTC
  ATGAAGGTGG GACTGAAGCC CTGCTCCCAA CTGCTTCTAG CCCAGGACGC TCACCTCCTT
  Y
  GTCTTTGGAG CCAGCCTGCA TGGGCTAGAC TTTGTCCAAC TGCTGTTCCT AGTTCTGTGA
  CCTTGGGCAA GTCACCGATG CTTCCTAAGC CTTGGTGACC AGTCCGCCAT CCTTTATCTG
  TTAGTCCACC AACTATCCTT TTAGTCCACA TTCTTTTGTT TGTTTGTTTG TTTTTTGTTT
  TTGTTTTGTT TTGTTTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss60312536	NES15816178	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs52004454					SNP	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312536	NES15816178	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46501835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	1617 bp proximal
Trim8	tripartite motif-containing 8	within coordinates
Tssr156776	transcription start site region 156776	1220 bp upstream
Tssr156777	transcription start site region 156777	1926 bp upstream