rs52005441 SNP Detail

Summary

• ID
  rs52005441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:139519192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAATCCAG CACTAGACTA
  TTATAAAAAC AAAACAGGCA ACACTTCACA CTAAAAGACT CAGGAGGGAC ATTGTTTCTA
  AGAATTTTGT GTGGTATTAT CACTTGCCAT GTTTGCTTTG TTCCTGATAT CCTGCATTAG
  CTAGGACTTT TATCTGTGAT AAAAAGGCTG TTGCTTTGCT TCTTACCTCA TCTCTCTCAA
  R
  TCTGTCCCTC CCTCAATGTC TTTCTTATGC CAGTGATAAA AGTATTTTAA GTTGTGGGTG
  TGCCATCCAT CCCTGGTGGC ATCTCTGCAA ACAACAATTT AAAGGTTATT TTTACATATC
  ACTTATATGT GATTAAGCCT TTAGGGAATA TGACAAAGAT ACCCAGTGGT GCAGAATAGG
  AATCCTTTAA ATAAGGTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61086378	NES16598856	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52005441					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61086378	NES16598856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:139519192 () rs orientation: forward

Symbol	Name	Function Class
Gm43678	predicted gene 43678	667 bp upstream
Rr74613	regulatory region 74613	532 bp distal