rs52006514 SNP Detail

Summary

• ID
  rs52006514
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99883046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGATTTC TTGCCAGGAA
  TCGTTGTGCA TGCTTTTAAC CCCAGCATTA AGGAGGCAGA GGGAGGCAGG TGAGTTAAAG
  GCCTATATAA CCTATATAGG GAGTTCCAGG CTAACTGGGG CTATGTAGTG GGACCCGGTC
  ATTGCTCTGT AAAAGTAAAA ATAGATACTG TTCCCTTAGT GCAAGAACAG ATTTTATTAA
  K
  TTTAACCCAT GTGTCACTTA AAATCATTCC TAACTAGGGA TTAATCCACT CTTATATGAG
  TCTTCATTTC CCAGCTAGCC TTGATCTGTA CACGTGCCCC TTTTCTTCCT CTGAGTACAG
  TAACTGCGGC TAGGTCCAAT ACAAAACCAA ACAAAAACAA AACAAAGACA ACAAATAAAA
  AACAACACTA GCCAAAATAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132716369	ENSMUSSNP3022663	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss323830205	CHEV_11_99853534	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52006514					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99883046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3803	CpG island 3803	1321 bp proximal
Krtap17-1	keratin associated protein 17-1	1014 bp downstream
Tssr110721	transcription start site region 110721	1772 bp downstream