rs52006576 SNP Detail

Summary

• ID
  rs52006576
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100826664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA GTTGGTGAAG AACCTCACTG
  G
  CCTGTAAGGA ATGGAAAGGC ACTTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148928319	ENSMUSSNP5911385	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321627451	CHEV_5_101107817	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52006576					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100826664 () rs orientation: forward

Symbol	Name	Function Class
Gm15777	predicted gene 15777	within coordinates
Hpse	heparanase	686 bp downstream
Rr378347	regulatory region 378347	718 bp upstream
Tssr52114	transcription start site region 52114	1271 bp downstream