rs52008158 SNP Detail

Summary

• ID
  rs52008158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98439920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGACTTT AAGAATCTCT
  GTCTAGAATC AAAAGCCAGC CACTAAGAAA TAATCTGAAT ACAACAGTGT CTGTTGGCTG
  GGCTTGCTCA TGCATTATAC CAATGCTGTG AAATTCAAGC TCTGACGCCA AACAGGCTGC
  ACACTGCAGT TGTTTCCCAC TAGATAAACT CTTTACATTC ATAATGTAAC TTAGACACCA
  Y
  GTCTTCAGAA TTCCAAATCA CAATTTCATT GTCTTTAGTA TCTTAACCCC CTGGCTTCTC
  CCAGTCCTAG TAGCACACAT GGTCTGGTCT TTTCAGACAG GACAAGCAAA GCATACCCTT
  CTTCCCTTCA GAGACCTGAG CTTTCTCGCA AAGCCCAACA TGAAAAGACC CCATTCTGTA
  GGAGAGAGGC CGGCCTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss63625985	NES17036538	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs52008158					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63625985	NES17036538	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98439920 () rs orientation: forward

Symbol	Name	Function Class
Ccnt1	cyclin T1	within coordinates
Rr391179	regulatory region 391179	1744 bp upstream
Tssr132942	transcription start site region 132942	650 bp downstream
Tssr136244	transcription start site region 136244	582 bp downstream
Tssr136245	transcription start site region 136245	1868 bp downstream
Tssr136246	transcription start site region 136246	1933 bp downstream