rs52008619 SNP Detail

Summary

• ID
  rs52008619
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23703770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCCTTTG TAAAGGATCA
  CTGATTATTG TTTGAACGTC AGTAGATTTT ATACATGAAT TTGGTTCTAA CAAGACAGAA
  CACGTGAGAT ATTTTTTGTA CTTTCTTTCT GAAGTAAACT TGTCAAGAAT TAAAATCTAA
  TCCACATGCT GAGATCAAAA TGTATGTAAA TATACTTCAA GTATTTTGTT ATGGACAATA
  K
  TGCGTCGTAC TCGGCCCCAT GGTGTAATGG TTAGCACTCT GGACTTTGAA TCCAGCGATC
  CGAGTTCAAA TCTCGGTGGG ACCTTCTTTC CTTTTGCCGT TCTACCAGTT ACTGGATCAT
  CTTGCTTACA TTTCTTCCAG TGGCTGGATC CTCCTTCTCA ATTCTGGTCT CTGCTAAGTA
  AGTATACGGG TGGTTAGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148805686	ENSMUSSNP1513329	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324289668	CHEV_13_23611469	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52008619					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23703770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5357	CpG island 5357	1311 bp distal
Gm54514	predicted gene, 54514	1350 bp downstream
Gm61424	predicted gene, 61424	within coordinates
n-TMcat6	nuclear encoded tRNA methionine 6 (anticodon CAT)	1837 bp downstream
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	479 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	13 bp upstream
n-TStga1	nuclear encoded tRNA serine 1 (anticodon TGA)	1373 bp downstream
Rr281116	regulatory region 281116	within coordinates
Rr281117	regulatory region 281117	1830 bp proximal
Rr403642	regulatory region 403642	1769 bp downstream
Rr403643	regulatory region 403643	1237 bp downstream
Rr403644	regulatory region 403644	373 bp downstream
Rr403645	regulatory region 403645	within coordinates