rs52009594 SNP Detail

Summary

• ID
  rs52009594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45868796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTTCATTT TCCCCACCTG ATGTGGGGAA ACCCCAAGAC
  TGGAACTTCC CATCCCAACT GCCCTGTTGG CCCTAACTTA CAACTCCCAT CACGCCCCCC
  Y
  ACCCCCGCCC CATCAAACCC ATTTTCTGCA CTGCACCAAA CTCCCCCTTG GAGCTGTACC
  TAGGAGAGGG TTTGTGACCA GACCCCATAT GATGGCTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145694966	ENSMUSSNP1428155	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52009594					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45868796 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	1554 bp distal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	within coordinates
Rr370254	regulatory region 370254	439 bp upstream
Rr527429	regulatory region 527429	within coordinates
Tssr144792	transcription start site region 144792	1970 bp downstream
Tssr144793	transcription start site region 144793	1600 bp downstream