rs52010270 SNP Detail

Summary

• ID
  rs52010270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:17420132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTGGGTA CAATATGTGA
  ATTTCCCAAA TAATCAAATA AAATATCATG TTGAAAAAAA AAAAGAAAGA AAGAAACAAG
  GTCACTGACA TGTGAGGCCA TAGTAGAATG AGATGGACAT TTAGTCACTC ATAACATGGG
  CCCATATAAA GTGAAGATTT GTAATAGCTG CATACAGAAA AAGCAAATCC CAGTGACAGA
  Y
  TCAGAAATGA CAGTGACACA CCAGACAGCA AACAGTACCT GTCACCTCCA GAAGCTAGTA
  AGGAACAAGA GAGACCTGTT TGCTCAGGTT TCACTGTTTG CATTGGGGTG GAGCCTGCTG
  CTCAATTGTT CTGCCACGCC CACTGCTGGA GCTTGCTGCC TTGCTGTTCT GGAGCCATAC
  ACGTGGTCAC AACGCAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60695309	NES16213243	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs52010270					SNP	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60695309	NES16213243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:17420132 () rs orientation: forward

Symbol	Name	Function Class
D9Mit295	DNA Segment, Chr 9, Massachusetts Institute of Technology 295	976 bp distal
Rr203187	regulatory region 203187	40 bp proximal