rs52010689 SNP Detail

Summary

• ID
  rs52010689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102902231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACATAAT CTGAGCCCTC
  ATCCTGTGTG ACTTCAAGGG GGTTGTGTAC TCCTCAAGTA TTTCTAAGAG TCCTGGGAAA
  CGCTCCTCAC AAAACGTTTG CAAATATATC CTGGTCTTTG TTGTAAACTT ATTCGAGGCT
  ATTATTCTGT TTTCCCAAAG TTGTTTTCCT TCCGAATGAA AATTATTTCA TCTTCCCAGA
  R
  GCAACCTCTT AACACAGTTT TGTAAGTGTA AAATTTTTAC AATAGGCATT TCCCCAAATC
  ACAAAAGTAC ACCAAACATC ACGTGTTTCT AAACTTTACA TCTGAACTCA AGATAAAAGA
  GACTGTAGGA CAGGGAAAAT GATTCTTTAA AACACAGCAT TACTACTATT CTACTGTCCT
  AGACTCTTTT GGACAAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60430277	NES15931049	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52010689					SNP	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60430277	NES15931049	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102902231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13629	CpG island 13629	629 bp proximal
Rr397897	regulatory region 397897	601 bp upstream
Rr582292	regulatory region 582292	1653 bp distal
Rr582293	regulatory region 582293	303 bp proximal
Sike1	suppressor of IKBKE 1	825 bp upstream
Tssr30945	transcription start site region 30945	794 bp upstream
Tssr30946	transcription start site region 30946	884 bp upstream
Tssr30947	transcription start site region 30947	1208 bp upstream