rs52010836 SNP Detail

Summary

• ID
  rs52010836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149211756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCCCCC ATCAGGTTCT
  CTTTTATCAG TCCACTAAAA TTACTAAAGA AGTATTTTTG CTTTGGTATT AAAGGGCAGT
  AGTGGACTTG GAGAAGCCCG CTTGAATTCT AGTGGCAGGG AATATTTTGA GAGTAGCCTA
  ATTCAGTAGT TTTGTTTTTA GCACAATTGA AATAAATTCA GTAAACTTAG TATGGTCTCA
  R
  TGACACTGTA AGGGAAATGT ACTAGACCTT AACTCTTGCT TTCTTGTTTC TTGATTTTCA
  TAGAATTAGA GGCGTGAATA CCTTGTGGAA GAGATTAAAA GGTAAAATTG TATTTACAGG
  TAAGTTTGCC TTTTATAAAG CCTATCCTGG TTCTACTGGA TGACTATTTG CATTGTACCG
  TGGACTAACT TATTTTAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60961291	NES16169789	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs52010836					SNP	A	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961291	NES16169789	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149211756 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	385 bp distal
Gm56997	predicted gene, 56997	583 bp upstream
Resf1	retroelement silencing factor 1	within coordinates
Rr380294	regulatory region 380294	206 bp downstream
Rr380295	regulatory region 380295	1232 bp upstream
Rr641719	regulatory region 641719	774 bp distal
Rr641720	regulatory region 641720	916 bp distal
Rr641721	regulatory region 641721	867 bp distal
Rr641722	regulatory region 641722	594 bp distal
Rr641723	regulatory region 641723	93 bp distal
Rr641724	regulatory region 641724	365 bp proximal
Tssr59650	transcription start site region 59650	940 bp downstream
Tssr59651	transcription start site region 59651	820 bp downstream
Tssr59652	transcription start site region 59652	776 bp downstream
Tssr59653	transcription start site region 59653	700 bp downstream
Tssr59654	transcription start site region 59654	503 bp downstream
Tssr59655	transcription start site region 59655	434 bp downstream
Tssr59656	transcription start site region 59656	70 bp upstream
Tssr64179	transcription start site region 64179	608 bp upstream
Tssr64180	transcription start site region 64180	573 bp upstream