rs52010870 SNP Detail

Summary

• ID
  rs52010870
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77039735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATCAGA ATGAGGGCAT
  AGGGCATCTA TCGTTCTACC CACAACAGGA ACAGATTAGA ATGCAAAGTT CCTGGCATTG
  TCAGACAAGA AAGTAGTAAT TCTTAAAAGT TAGCCTCTTA AAAGTCAAGG GAAGCCTGTC
  ATGTCTAAGC AACTGTTAAT AGAACAATGA GAGGCAGTTA GCAAGCAAAC TGTGTGGGAA
  K
  GTGGAATAAT GACAAAGTTG GAAAAAAAAA ACTTTAAAGA GGATCATACA AGAAAGGAAG
  GAGAACTGGG AGACAAGAAA CCAGCAGTTG CCAATGCTGG GAATTACATC AGACAAATGA
  TAACAGTATA CATCAAAGAT TGACGGCTGG AGTTTCAAAC AGGAAACAAA AGTGAACGCC
  AACATTCAGA AAGGAGGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373177	NES15266563	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52010870					SNP	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373177	NES15266563	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77039735 () rs orientation: forward

Symbol	Name	Function Class
D10Jhu60	DNA segment, Chr 10, Johns Hopkins University 60	948 bp proximal
Rr384958	regulatory region 384958	756 bp downstream
Rr434428	regulatory region 434428	1576 bp distal
Rr434429	regulatory region 434429	168 bp proximal
Tssr94215	transcription start site region 94215	1714 bp downstream
Tssr94216	transcription start site region 94216	1688 bp downstream