rs52012255 SNP Detail

Summary

• ID
  rs52012255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96079041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCGCACAG GGAGCACACT
  GGCCCTTTAA GAACCGCGGC TCCCGCCGCG CACTGGGAGT AGGGCTGCGG AGCCAAACTC
  GCCGGGGACG CCGGGCGCTG GCTAGCTGGC TGGCGGGCTC GTCGCTCTGT CGGGCCGGTT
  CCCTGCGCCC CTCCCGGGAC TGCCTGGGGA TCCAGGCCCG ATTGGGCGCG GCAGCTAGTG
  R
  AGTCGCCAGA GGGAAGCGCG CACTCTGGGC AGCGCGGAGG ACCTTGGGCA TGGACAGAGA
  GTGCAGGGCG CGCAGGGGGC GCCGCGGGAC CGGGCGGCCG GAGCGCTGAG CCAGACAAAG
  GCTCTGGAGT TCTGCTTGCT CTCGGGGGCC GGGGCCAGGG CGCACCGCGC CGACGCTGCG
  AGACTCTGCG GCGTGCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60651685	NES16269076	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52012255					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60651685	NES16269076	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96079041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20872	CpG island 20872	within coordinates
Mmp15	matrix metallopeptidase 15	within coordinates
Rr668226	regulatory region 668226	135 bp distal
Rr668227	regulatory region 668227	within coordinates
Tssr78982	transcription start site region 78982	162 bp downstream
Tssr78983	transcription start site region 78983	84 bp downstream