rs52014071 SNP Detail

Summary

• ID
  rs52014071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112642724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGT GTCAGGGTTC TCAGCACAGA
  Y
  GGTGGACCAG TCTGAGGAAT GTCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss138725633	ENSMUSSNP719432	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss324170102	CHEV_12_113914501	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52014071					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112642724 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	1458 bp upstream
Cpgi5173	CpG island 5173	1381 bp distal
Cpgi5174	CpG island 5174	1813 bp proximal
Gm30150	predicted gene, 30150	320 bp downstream
Rr369631	regulatory region 369631	751 bp downstream
Rr473554	regulatory region 473554	1869 bp distal
Rr473555	regulatory region 473555	1890 bp distal
Rr473556	regulatory region 473556	343 bp distal
Rr473557	regulatory region 473557	1287 bp distal
Rr473558	regulatory region 473558	822 bp distal
Rr473559	regulatory region 473559	631 bp distal
Rr473560	regulatory region 473560	385 bp distal
Tssr115391	transcription start site region 115391	1867 bp downstream
Tssr117880	transcription start site region 117880	1923 bp upstream
Tssr117881	transcription start site region 117881	1905 bp upstream
Tssr117882	transcription start site region 117882	1526 bp upstream
Tssr117883	transcription start site region 117883	1476 bp upstream
Tssr117884	transcription start site region 117884	1453 bp upstream