rs52014328 SNP Detail

Summary

• ID
  rs52014328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72887449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTCAGCT AGGCTGAGAC
  TGGGAACTAG GGGCTGCTTT GAGTGTTTGT GTGCACACAG TTGGCTCTAT GAGAGTGATT
  CTCAATGGCA GGTGGCTGCC TGCCTTGCAG TCCCTTGCCA GCTGTGCCCC AGCCCAGGGA
  TCTTGTGGTA GTAGTTTTTT AAACCTCAAC TAGTCTGCCA TGATCGGACC ATAAAGGAAG
  R
  ACTTAAACTT GGGGTTAGTG GAGAGTGAGC ACGATATTTT CTGATGGATC CAGGGATGAC
  CTACTCCCCT GTTGAGGGCC TTGTGTCTGT CTTCATCCTT TGGTTGCAGC TTGGAGGGTG
  AGGGAAGAAC TGAGCTTGGA TCTCCCCATT TCTCTCTGCA GTCACACAGC CTGAGTTCAA
  CTCCTGATCC ATCCATCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60750567	NES16381682	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	A
ss144663619	ENSMUSSNP1498898	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52014328					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750567	NES16381682	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72887449 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	789 bp upstream
Tssr7322	transcription start site region 7322	818 bp upstream
Tssr7323	transcription start site region 7323	861 bp upstream
Tssr7324	transcription start site region 7324	910 bp upstream
Tssr7325	transcription start site region 7325	925 bp upstream
Tssr7326	transcription start site region 7326	955 bp upstream
Tssr7327	transcription start site region 7327	984 bp upstream
Tssr7328	transcription start site region 7328	1287 bp upstream
Tssr7329	transcription start site region 7329	1322 bp upstream
Tssr7330	transcription start site region 7330	1336 bp upstream
Tssr12178	transcription start site region 12178	825 bp downstream
Tssr12179	transcription start site region 12179	868 bp downstream
Tssr12180	transcription start site region 12180	932 bp downstream
Tssr12181	transcription start site region 12181	953 bp downstream
Tssr12182	transcription start site region 12182	996 bp downstream
Tssr12183	transcription start site region 12183	1017 bp downstream