rs52014341 SNP Detail

Summary

• ID
  rs52014341
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:83403041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTCTCT TAGCATTGAG
  TTTAAATATT AAATATTCAT GCTTACTCTA TAACTCCAAA TTCATTCTAA AATAATTCTT
  TTCAAATCTT ATAGGTATTG TTTGTTTTCT ACTCTTTTAA TATTTAATAA AAAATACCAA
  CTGTGTAGCT ATGTATGTTC CCACAGCATT GTGAACCTTG TGGGTTAGCC CAACAGATAT
  W
  ACTGATGTTT TGCCATTATT CCTTTTATGA AGCCTGCCAT CCTTGCCACA CCAGAGTAAC
  TATCATGCAG GCAGGCATCA CATCGACACA AGCATATTTT CTCTATACAC TCGCCATTCA
  GCAGAGGGTA GCTTCATGGT TTATAGAATT TTCAATTGGT AAAAGTAATT GTTCAGTGTT
  TCAGGCTGTG GTCTACTGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144833257	ENSMUSSNP2239794	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52014341					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:83403041 () rs orientation: forward

Symbol	Name	Function Class
Gm37989	predicted gene, 37989	1276 bp downstream
Gm69621	predicted gene, 69621	940 bp downstream