rs52014557 SNP Detail

Summary

• ID
  rs52014557
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128651671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCCAAAAT TGAAGACCCT GAGTTACTCG ATGTTGCCAT
  CCTGAGAGGA AGCTTTATGG TGGAAACTCA AAGGTCATGT GAAACTGAGA GACACATATA
  C
  TTCCTTTATC TGTGTTGTGA CAGAATTTTC TGAAGAGATA CAAGGGGACT TCTGACCACT
  GGATTGGCCT GCACAGAGCA TCAACACAGC ACCCTTGGA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss133644076	ENSMUSSNP5382624	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321945999	CHEV_6_128624726	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52014557					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128651671 () rs orientation: forward

Symbol	Name	Function Class
Clec2h	C-type lectin domain family 2, member h	within coordinates
D6Mit257	DNA segment, Chr 6, Massachusetts Institute of Technology 257	1283 bp distal
Tssr59073	transcription start site region 59073	695 bp downstream
Tssr59074	transcription start site region 59074	42 bp upstream
Tssr59075	transcription start site region 59075	1911 bp upstream