rs52016501 SNP Detail

Summary

• ID
  rs52016501
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:29752231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGGGAG AGGGCTAGAG
  ATAGGGAGAG AGAAAGAGAT CTTAGAACCA ACTTCTGTAC AGAGCAGTGG TTCTCTACCT
  TCCTAACACT GTGATGCTTT CATACAGTTC ACTGCTACTT CATAGCTGTA ATTTTGCTAG
  TGTTATAAAT CATACTTTAA ATATCTGATA TGCAAGATAT CTGATGTACA ACCTTCATAT
  S
  AGATCTCAAT TTCCAGGTTG AGAACAACTG TTCTACAGAT TAGCATAGGA TCTTTAGAGA
  ATTGTCCACA CCCAAACTTT GCAGACTTCT GGGTTTAATA CTAGTTGTTA GCATGCTGTC
  TAAACTCCAG CCCACAGTTA CCTGGCAATA GCCAGGTATG CTCCTCCCCA CAATTGCCTG
  GCAACAGCAA GGTAAACCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52214767	NES15216192	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs52016501					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52214767	NES15216192	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:29752231 () rs orientation: forward

Symbol	Name	Function Class
Rr227213	regulatory region 227213	1431 bp distal
Rr227214	regulatory region 227214	1031 bp distal