rs52016534 SNP Detail

Summary

• ID
  rs52016534
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:177992522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ACTAGTACTC TTATACACCC GTGGCTCTTG AGGAGTTTGT
  CGTGCATAAG GCACATCCAA AAAACATTCC TTTGCAAAAA ACAAAGGCTA GGTAGAAGAA
  T
  TGGAATGTAC CGGTAAAGGT ACTGGCCATG ATCTTACTAT GGCCCATAAA GGTATACTTA
  TCCTGGTTTC AATCATCAGG AGCAGGAGAA TCATCTTGGG G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134085923	ENSMUSSNP845923	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss147406908	ENSMUSSNP2149882	ENSEMBL	ENSEMBL_Sanger	r	SNP		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52016534					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177992522 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2			Intron
				Noncoding-Transcript-Variant
Gm69636	predicted gene, 69636			within coordinates