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rs52016951 SNP Detail
Summary
  • ID
    rs52016951
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:6410185 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATGATATTGG GTTCTTTGAA
    ACTGATATGA GATATCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
    TCTCACACAC ACACACACAC ACACACACAC ACGATACACA GAGATGACTC CAAAGAAAAG
    CGATGTAGCA AAGGGGTGTA GTCCTTGAAG TTTACGTTGA TGCTACAGGG CTGAGGATGT
    R
    CTCACACAGA GTACTTGTCT AGGTTGGACC AGGCCTTGGG CTGGGCCCTA GCAGCAACAC
    TGGCAACTGA CATGGGAAAA TGCAGTATGA AATATAAGTA ATTAGTGGGA ATTTTCCAGG
    ATTATTTCCT GAAAATGACA ATTCATTTTG AATTGTAGAG ATATGACAAT TTTCACTTAT
    TAGTGACTTC ATGAAAAATA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
CAST/EiJ
FVB/NJ
MOLF/EiJ
WSB/EiJ
ss60967563 NES16157128 PERLEGEN MM_PANEL2 f SNP G A G A
SNP Consensus Information
SNP Consensus Type
CAST/EiJ
FVB/NJ
MOLF/EiJ
WSB/EiJ
rs52016951 SNP G A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60967563 NES16157128 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:6410185 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm16307 predicted gene 16307 1802 bp upstream
Rr157505 regulatory region 157505 616 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory