rs52019276 SNP Detail

Summary

• ID
  rs52019276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90916507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAT ACCAGCTTCT CAACATGGAC
  R
  TCAGCCGCAG ATCTTCACTA GTAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147290179	ENSMUSSNP3998075	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss323387258	CHEV_10_90543390	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52019276					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90916507 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	1538 bp proximal
Rr436975	regulatory region 436975	860 bp distal
Rr436976	regulatory region 436976	1090 bp proximal
Rr436977	regulatory region 436977	1774 bp proximal
Tssr95222	transcription start site region 95222	1446 bp upstream
Tssr98900	transcription start site region 98900	1911 bp downstream