rs52019734 SNP Detail

Summary

• ID
  rs52019734
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16455528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGCCCTC TCCCGTGTCA
  CAGGCAGTGG GAGGAATGGG TAAGCAGTTT TGGAGGAGGA GAGTTGTCTG AGGGGCCCAG
  GTGGTCAGGA CTCACTTCCT GATCGAGTGG TTGTTCCCAG GTGCAAAAGG GGGAGAGAAA
  TGCAGAACTT CAGAAATAGG GCAAATGGCA GCCATTCAGG CTATGGAGAC CCAATAAAGT
  M
  AAAATGCTGG GACTAAAATT GAGTTTGGGA GGGAGGCAGA AGAAGATGAA ATCCATTCAT
  GACTTTTCTT AATATTGGAA GGTCTTCGAC CATTATTTAT AACATAAGAA TTTCTGAATG
  CATTATTACA AAAAAAAAAA AAAAAAAAAA AACCTTAAAG AATGAATGGG TTTAGAGACA
  GTTGGGGTGG GGGAGGGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60972098	NES16154410	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	C	C	A	A	A	A	A	C	A
ss148394903	ENSMUSSNP3648644	ENSEMBL	ENSEMBL_Sanger	f	SNP	C							A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs52019734					SNP	C	A	A	A	C	C	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972098	NES16154410	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16455528 () rs orientation: forward

Symbol	Name	Function Class
Ceacam9	CEA cell adhesion molecule 9	326 bp upstream
Gm5586	predicted gene 5586	1693 bp upstream
Tssr64618	transcription start site region 64618	351 bp upstream
Tssr70767	transcription start site region 70767	1663 bp upstream