rs52020542 SNP Detail

Summary

• ID
  rs52020542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30451273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAA AGTAGCCCAC GACATCAACA
  R
  TGGCATCGGA CACGCAGGAA AGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60990278	NES16139139	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	G	G	A	G	G		A	A	A	A		G
ss148687386	ENSMUSSNP3075516	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss322136411	CHEV_7_31536867	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52020542					SNP	A	A	A	G	A	G	G	G	A	G	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60990278	NES16139139	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30451273 () rs orientation: forward

Symbol	Name	Function Class
Rr644909	regulatory region 644909	1669 bp distal
Sbsn	suprabasin	within coordinates
Tmem147os	transmembrane protein 147, opposite strand	within coordinates
Tssr65808	transcription start site region 65808	305 bp downstream
Tssr71856	transcription start site region 71856	309 bp downstream