rs52020788 SNP Detail

Summary

• ID
  rs52020788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134023285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTTGGGC AACCTTTTGA
  AGACATTGGC AACCAAGAAG AAGCCCTGTA CAGAAACAGC AATAAGAGAA AAAGCCAGAT
  ACTCATGAGT GTGTGTGCAT CTCATGTGGT TTCAAAGTGG TCCAGGACCA CTGATCCCTA
  CTGATTTGGG CCAGTAAAAA GGTAGAACAA CACAACAACA TGGCACAAAG CAGCTTACCT
  Y
  ATGATGGCCA GGAAGCATGA AGAAGAGGAA GAGACCAGGT TCCAATATCA CCTCTAAAGG
  GACACCCACA ATGAGCTCAC TTCCTACCAC TAAACCCCAT CCCTGCTTTA AAAAAAAATC
  ATTGAAAAAA AAAAAAACAA AACAAAAAAA AAACTTTACT TGGTATAGGA AGAAAGCCCC
  TCATGTTCTG TGGTGCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60847183	NES16015979	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52020788					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60847183	NES16015979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134023285 () rs orientation: forward

Symbol	Name	Function Class
D5Mit141	DNA segment, Chr 5, Massachusetts Institute of Technology 141	1867 bp proximal
Rr127272	regulatory region 127272	1886 bp distal