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rs52022113 SNP Detail
Summary
  • ID
    rs52022113
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr17:45863399 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCAATGCTG ACCTCATATG
    GTCAATGCAG GGATTGCCAC ACACCTGTTA GGGCTCAGGC CCATACACCC AGTCGGGTTG
    AAATAGTTAT CCTTAAATGT GGCTTCTTTG TGAATTAGAA AAGTGGTCCC TTGCACTCCT
    GTAAGTCGGG TTCCCCCATC GATGATGTTT AGACCTTGGT AAGAGTTTCA ATGAAGAAAA
    S
    TTATAAGACA TAGGATTAGG TCAAAAAAAG CAAGTTCTGT TTTTCTAACT ATGGGTTCTT
    GGGCAAGCCA GCTAACTTCT CTGGGCCTCG GGCAGGTTTG GTTTTTTTTT GTTTTGTTTT
    GTTTTTTTGT TTTTTTGGTT TTTTTTTTAA CCCGTAGTTT ATACATTTGC TCTAGATTTT
    GAGAATGGAA GGGGTGCATA                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60259851 NES15755811 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C C C C C G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs52022113 SNP C C C C C C C C C C C C C C G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60259851 NES15755811 PERLEGEN MM_PANEL f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:45863399 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr405301 regulatory region 405301 42 bp downstream
Rr527425 regulatory region 527425 within coordinates
Rr527426 regulatory region 527426 196 bp proximal
Rr527427 regulatory region 527427 1905 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory