rs52022390 SNP Detail

Summary

• ID
  rs52022390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163436639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATAGTGG GTCAGAAAGT
  GCTTAATTCA AAGTCACCAA GCCCTTGGAA CCCCCTGTCT CTGCCTCCAC TGCACAGGGT
  TACAGCTGCA CACTACCTCG CCTGGCTTTT GTTTGTTATG TTTGTTGTAT CGGTGTTTTG
  CTTGCATGAG TGTCTGTGCA CTGTGCCCAT GGAGGCCCAG AGAGGACATC AGAGCCGCTA
  R
  AACTGGAGTT ACAGACAGTT GTGAGCTCCA CATAGGTGGT GGGAAGGGAA CCTGTATCTT
  CTGTATGAGC AACACGTGCT CTTAATTGTA GAACTCTCTC TCCAACCCTC GATTTTTGTT
  TTGTTTCGTT TCATTTTGTA TTGTATTGTA CTATGTAGGT GCTGGAAATG CAAACTCAGG
  TCTTCATGTT GGCATAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148206270	ENSMUSSNP4490055	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52022390					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163436639 () rs orientation: forward

Symbol	Name	Function Class
Rr374198	regulatory region 374198	249 bp downstream
Rr569427	regulatory region 569427	363 bp distal
Rr569428	regulatory region 569428	311 bp proximal