rs52022833 SNP Detail

Summary

• ID
  rs52022833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35387969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATCTGGT ATGGTATATG
  TGTATAATCT AAGTGCATCC TTTTATTCAT TAAATCATCT TCTAATATCT AGATGTTGTG
  TTGCTATGCA TAGACTACAT TATTTTGAAA GAACAATTTC AGAAAGAACA TATTTGGGGG
  AATATTTCCC ATGTGGAGAG CATGAACAAC ATTGTGGGCT TGATCATACA GTATGTAAAC
  R
  AGAAATGTTT GGGCAAACAA GCCCCAACAG AGAGATAGGT ACAGAGGCCA AGGAGCTGTG
  ACGCTCAGGA GGCTGTAACA GGGTACACAT GTCTGTCACA TGGTTTGTGT TGGAGTGGGA
  AACTCAAGTT TTACTTTATA GACTTTCTAG CCCTTCTCCC CAATCTCTGC TGTTGGCTGA
  ATCTGTAGGC TGAGTCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60877202	NES15975922	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52022833					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60877202	NES15975922	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35387969 () rs orientation: forward

Symbol	Name	Function Class
Gm38789	predicted gene, 38789	1770 bp upstream
Tssr55592	transcription start site region 55592	937 bp upstream