rs52023250 SNP Detail

Summary

• ID
  rs52023250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:72850577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGATGGGAA AAGTGGGAGA GGCTAGGGCT GATGTCCCCT
  GAGGTTGGCA GAGGAGGTAT AAGCCCCCAG GATGTGTGTG CTTGGGAGGG TGCAGGGTGA
  Y
  TGCTGCTTGA ATGTCTATAT CTCCATGTGT CGGGGAGGGA GGTCTCCAGT GGGAAAGTAT
  CCCTGGGTGG CTCTGTCTCC AGCAGAGTCC TACCAAGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132417925	ENSMUSSNP1442937	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52023250					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:72850577 () rs orientation: forward

Symbol	Name	Function Class
Atp2a3	ATPase, Ca++ transporting, ubiquitous	1418 bp upstream
Cpgi3227	CpG island 3227	1007 bp proximal
Rr450778	regulatory region 450778	1956 bp distal
Rr450779	regulatory region 450779	682 bp proximal
Rr450780	regulatory region 450780	928 bp proximal
Rr450781	regulatory region 450781	1429 bp proximal
Tssr102861	transcription start site region 102861	537 bp upstream
Tssr102862	transcription start site region 102862	1412 bp upstream
Tssr102863	transcription start site region 102863	1429 bp upstream