rs52023265 SNP Detail

Summary

• ID
  rs52023265
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:96142532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAAGATA TCACCGGCAA
  GGACAGCTTG TCAGAGGAGA TGTGCCTCAG CAAGTGGATA CCTGCCGTCA AGCTCACAGA
  CACAGCAATG GCTGGGGGTG TTGGCTTTGT ACATGCCCTT GGCCTCAGAA TAATGAAGCT
  GTAGAGTCCT CCCGTGGGCC CCTCTTTCCT CAGGTGAAAC TGTGGTGTGA TGAAGAAGCT
  K
  TTGAGGGAGC GGCTGTGAAC TAGTCCTGAG GTGATCTAGT GCTGAGGCGA CTGATGCTGA
  TTCTCTTCCA TTCACTCCCG CAGTCCCTTT AATGAATGTT GCTGACTGAG TTTCAGAGAT
  CGCAGACACT CAGACAGCAG CCAAATACCT TTTCTTCTCA TCTTGTTTAG GGATTTCAAC
  CATTCCTATG TGTCTTGAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52170278	NES15315870	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52023265					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52170278	NES15315870	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:96142532 () rs orientation: forward

Symbol	Name	Function Class
Gm40748	predicted gene, 40748	within coordinates
Gm48427	predicted gene, 48427	within coordinates
Tssr99082	transcription start site region 99082	257 bp downstream