rs52024062 SNP Detail

Summary

• ID
  rs52024062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106521277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCC CAGTACTTGG GAGGCAGAGG
  Y
  GGGTGGATCT GTAGAGTTTA AGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136939141	ENSMUSSNP4961307	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss323186511	CHEV_9_106546409	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52024062					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106521277 () rs orientation: forward

Symbol	Name	Function Class
Gm28111	predicted gene 28111	509 bp downstream
Grm2	glutamate receptor, metabotropic 2	456 bp downstream
Rr686373	regulatory region 686373	562 bp distal
Rr686374	regulatory region 686374	685 bp distal
Rr686375	regulatory region 686375	73 bp distal
Rr686376	regulatory region 686376	1772 bp proximal