rs52025968 SNP Detail

Summary

• ID
  rs52025968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:69762923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAGCAA GCGGTGGGAA
  CAGCTGAGCT GACTCGTTAA TCTGAGAGAT TTAGAAACGG TTCAAAGTTA GTGTGCTCCG
  AGGTCTCCCA GGCAGGCGGG TCCTGCTCCC ACCAGTAACT CCCGAAACTC GGAATAGATA
  TGCCCCAGCC TGAAATCCTA AGAGGAAACT GGTTTAAAAA AACACCGCCA ATCTCTTTCC
  Y
  AGGCAGGTGA GATAGCTCAG TTGGTTTAAA AGCACTTGCT CAGCCTGACT CAGTTTGACC
  CTGAAACCCA CGTAATGGAA GGCAAGAACT GACTCGAACG GTTGTCCTCT GACCTCCACA
  GGTGCCCTTT GGCACGTGCA CACTAACACA CACAAGCCAA TAACTAAATA AAGCCGTTCC
  CTTCCCTCAC TTTAAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61285574	NES16896164	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs52025968					SNP	T	T	T	T	T	T	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61285574	NES16896164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:69762923 () rs orientation: forward

Symbol	Name	Function Class
Ank3	ankyrin 3, epithelial	within coordinates
Rr433505	regulatory region 433505	950 bp distal
Rr433506	regulatory region 433506	within coordinates
Rr433507	regulatory region 433507	1263 bp proximal
Tssr93971	transcription start site region 93971	1591 bp downstream
Tssr93972	transcription start site region 93972	1307 bp downstream
Tssr93973	transcription start site region 93973	1269 bp downstream
Tssr93974	transcription start site region 93974	1240 bp downstream
Tssr93975	transcription start site region 93975	1223 bp downstream
Tssr93976	transcription start site region 93976	1108 bp downstream