rs52026582 SNP Detail

Summary

• ID
  rs52026582
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40520063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCACC TTAGGAAAAT
  TATTCCTGTG TGTTCGATAG GCCTGCAATA TATCTTCAAT CCTTTAATCT AAAAAAAGTT
  AAAGGCCTTA TTAATTTGAA GAAGATGATG ATGATGATAA TAATAACAAT AATATTTTAT
  GAGTTCTGTG ATGTATTTCT GATTTTCCGT GTTGTTGAGG ATCTGGCTAC TCGTTTAAAA
  M
  TAATTATCAT GTAATTTTAG TATATTGCTT TAGTATTACC CTTACCTCAT AGGTACCCTA
  CATGCAAGTC AGAATTTCTT TTTGGTGTAG TTTAAAAATA AATCTTATCA TACAACTTGT
  CCTTGAGATT GGGGGCAGGC TATACATAGC TTGCTACAGT TGATTATTCA ATATGCATAA
  TATAGTACAC TCACACTCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147693594	ENSMUSSNP6965368	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52026582					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40520063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	441 bp distal
Gm63080	predicted gene, 63080	515 bp upstream
Rr406269	regulatory region 406269	1199 bp proximal
Rr501588	regulatory region 501588	1622 bp distal
Rr501589	regulatory region 501589	1059 bp distal
Rr501590	regulatory region 501590	558 bp distal
Rr501591	regulatory region 501591	824 bp proximal
Tssr4586	transcription start site region 4586	1365 bp downstream
Tssr131170	transcription start site region 131170	1776 bp downstream
Tssr131171	transcription start site region 131171	1746 bp downstream
Tssr131172	transcription start site region 131172	1663 bp downstream
Tssr131173	transcription start site region 131173	1613 bp downstream
Tssr131174	transcription start site region 131174	1585 bp downstream
Tssr131175	transcription start site region 131175	1442 bp downstream
Tssr131176	transcription start site region 131176	1401 bp downstream
Tssr131177	transcription start site region 131177	1346 bp downstream
Tssr131178	transcription start site region 131178	1310 bp downstream
Tssr131179	transcription start site region 131179	1519 bp upstream
Zfpm2	zinc finger protein, multitype 2	within coordinates