rs52027350 SNP Detail

Summary

• ID
  rs52027350
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21919909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGAGCT GCCCCTGACA
  CGGGCCTGTC CTTAGCCAGG TGCCCTCGTA TCCCATTCTG CTTCTTGAGG CAGGGTATGT
  GTAGCCCAGG CTGGCCTTCA GTGTATATCC ACGAACCTTG AACCTGGTCC TGCAGGATGT
  TTCTGGTTTC TTGATTGGTT AGGTTTTTTT TTTTTTAAAC TGTCATGATG GCTCATCTCT
  R
  TGTGCCTGGT TATCTTTGTG TTGGTCATCA GACGTGGAAA CCATAGGGAT GCGGCCGTGG
  TGGGAGGGCC TTTTCTAGAG ATTATTTCCC CTGTCTGGTG CTGAGGACCT TCTCCTCCAG
  GGATGCTAAG CCCAAGTTGA GGGTTTGAGA TTCTGACCTC AGGCAGTATC CAGGGAATGA
  ATCTAGTGCC CTACAGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss61359706	NES16732134	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs52027350					SNP	A	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61359706	NES16732134	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21919909 () rs orientation: forward

Symbol	Name	Function Class
Prkcsh	protein kinase C substrate 80K-H	within coordinates
Rr199558	regulatory region 199558	1492 bp proximal
Rr199559	regulatory region 199559	1892 bp proximal
Rr208358	regulatory region 208358	109 bp distal