rs52028219 SNP Detail

Summary

• ID
  rs52028219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:82273182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT TCTCACTGTC ATCTATAGAT
  Y
  CTATGCAGTG TAATTTTTAC TTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148747192	ENSMUSSNP6480248	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52028219					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:82273182 () rs orientation: forward

Symbol	Name	Function Class
1700031L13Rik	RIKEN cDNA 1700031L13 gene	622 bp upstream
Tssr51487	transcription start site region 51487	1988 bp upstream
Tssr51488	transcription start site region 51488	1962 bp upstream
Tssr51489	transcription start site region 51489	680 bp upstream
Tssr51490	transcription start site region 51490	663 bp upstream
Tssr51491	transcription start site region 51491	638 bp upstream
Tssr51492	transcription start site region 51492	612 bp upstream
Tssr51493	transcription start site region 51493	595 bp upstream