rs52028457 SNP Detail

Summary

• ID
  rs52028457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172039262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG GTGGATCCTG TGAGTGGATG
  R
  TGCACGTGCT CAGATCATGC ATTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120010378	PARCsnp_1.07456	PARC_SEQ	INBRED	f	SNP			A	G
ss146184038	ENSMUSSNP3576462	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320123260	CHEV_1_174141826	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs52028457					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172039262 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	1350 bp downstream
Tssr15168	transcription start site region 15168	1569 bp upstream
Tssr15169	transcription start site region 15169	1491 bp upstream
Tssr15170	transcription start site region 15170	1469 bp upstream
Tssr15171	transcription start site region 15171	1451 bp upstream
Tssr15172	transcription start site region 15172	1370 bp upstream
Tssr15173	transcription start site region 15173	1276 bp upstream
Tssr15174	transcription start site region 15174	1222 bp upstream
Tssr15175	transcription start site region 15175	288 bp downstream
Tssr15176	transcription start site region 15176	1369 bp downstream
Tssr15177	transcription start site region 15177	1423 bp downstream
Tssr15178	transcription start site region 15178	1447 bp downstream
Tssr15179	transcription start site region 15179	1469 bp downstream
Tssr15180	transcription start site region 15180	1674 bp downstream