rs52029521 SNP Detail

Summary

• ID
  rs52029521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30065497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTGAGG AAATGTTGAC
  CTCTATGCTG AGGTCAGGCA CTGGTGACCC TGGGAAGGAA GCCATGCACA GATAAGTGCC
  GTAGTCACTG AAGTGCAGGT CAATGAGCTC CAGGCTGCTG GTGACAGCGG GCAACTCGGG
  GTCATTTCGG GTCACCAGCA GCCGCTTGGA TGTGCGTGCC GGCTTGCCGT TTTTAAACCA
  Y
  TGATAGTTCA CCTTCTCCTG GGGCACCGCA TCCACATGGC ATGACAGCTT CAGGTCCTGA
  CCGAGTTGAA TGTTCTCGCT TTCTTTGATC ATGTCGGGGG TGATCTGGAA TGTGGCGTTC
  TTCAGGGCTG CAAGGAGATG GGGTTCGAAG AAGGCTGGAG CTGACCCAAG GACAGGTATC
  CATGTTCCAC CCCAGCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60556125	NES16574316	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	T	C		T
ss325355131	CHEV_17_29983468	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs52029521					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60556125	NES16574316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30065497 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	20 bp upstream
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	within coordinates
Rr330463	regulatory region 330463	1904 bp proximal
Rr341132	regulatory region 341132	within coordinates
Rr392501	regulatory region 392501	285 bp upstream
Tssr143596	transcription start site region 143596	7 bp upstream
Tssr143597	transcription start site region 143597	24 bp upstream
Tssr143598	transcription start site region 143598	1697 bp upstream