rs52030911 SNP Detail

Summary

• ID
  rs52030911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52649584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTAGCAGT TTCTGACCTT TGTCCCTCAT TTTACAGCCC
  ACAAAGCTAT GACTTGAACA GCTAAGACTT CGCTGTTATT TAAAATTACA ACAAATATTT
  Y
  CTCCAAGTAG GTATGTTTTA CACATTTGTA TCATAACAGG GCTAACATGT CATTTAATAT
  ACAGGAAAAG GAACGGAAGT ACAAGAGTGA CTCTGCTATT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52424035	NES15399334	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52030911					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52424035	NES15399334	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52649584 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	479 bp upstream
Cpgi4596	CpG island 4596	173 bp proximal
Cpgi4597	CpG island 4597	1840 bp proximal
Gm23296	predicted gene, 23296	1684 bp downstream
Gm24859	predicted gene, 24859	987 bp upstream
Gm59577	predicted gene, 59577	1624 bp downstream
Rr369517	regulatory region 369517	1883 bp upstream
Rr403283	regulatory region 403283	852 bp upstream
Rr403284	regulatory region 403284	1615 bp upstream
Rr466025	regulatory region 466025	494 bp distal
Rr466026	regulatory region 466026	within coordinates
Rr466027	regulatory region 466027	1553 bp proximal
Tssr116285	transcription start site region 116285	453 bp upstream
Tssr116286	transcription start site region 116286	430 bp upstream