rs52031253 SNP Detail

Summary

• ID
  rs52031253
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53766288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCATCAT GCTGCCCTTC
  CTTAGTCAGT CTTGGCGTCT GCTTTTAAGG ATCTCCTTCT TATTCCTCCA CAGTCACCTT
  CCAGCTCAGC CGCTGTTTAT TTAACCCAAA CACTCTGCCT TGTATGGAAC CTTCCAGGAT
  TATGCTTCTT GGGCTGCTTA CATCAGCTTT GGTCCCAAGG GGACCATTCT CTCTTGTGAT
  A
  AAGTCAGTGT GTGTCCTCTG TCCCTCTGAT GGTGGGATGA CGTTCATATC AGTATGTTCC
  ATGTTCCGTG TTACTTAATT GCACTTTTAT TAATGAAGTT GTACAAATTA GTAACTGAAG
  TCCTAAAGGT GTAGATATTG ACAGCTAAAC TTCTGCCCTG GTTTTTTAAA ATTCACTTCT
  GTCTTTTCTC TCATACAGTG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss137758476	ENSMUSSNP4051647	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52031253					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53766288 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	313 bp proximal
Rr263732	regulatory region 263732	400 bp proximal