rs52033398 SNP Detail

Summary

• ID
  rs52033398
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171043398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAG CCTGTCTGCC CCTCAAACTC
  T
  TGCTTTCCCT CCCATACTGC TTTTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146157098	ENSMUSSNP4693902	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320117254	CHEV_1_173145960	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52033398					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171043398 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nr1i3	nuclear receptor subfamily 1, group I, member 3			Intron
				Noncoding-Transcript-Variant
Rr423243	regulatory region 423243			1798 bp distal
Tomm40l	translocase of outer mitochondrial membrane 40-like			181 bp downstream
Tssr9983	transcription start site region 9983			1822 bp downstream
Tssr9984	transcription start site region 9984			1784 bp downstream