rs52034279 SNP Detail

Summary

• ID
  rs52034279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15886918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTAAAAT AAGCCAAATA
  AAGCATAACT TGGCCAGAGA ATTAAAAACA AAAAAAACAG GACAAAATTT TCCCTTGTAG
  TCTAGAATTG GACATTTAAG TAGTGTACTA ATCTTACTGG AGATGGACTC AGTTGGATTT
  GGTATTTGAG AAAGGGGCTC AGTGTGAAGT CTGGTCTAGT TTTCAGTTGG CAGTGTTCCT
  Y
  ACTCAGGCTC TCAATACTGC ACTGCAGACT CGTACCACTG GCAATAAAGA CACGTCCGTC
  CACTGTAGTT TTATCTGGGG AGCTCCCTTG CTCTTCCTCA GGTATTACTG TAGGTTTTTC
  ATGCATCCTC TTGGAAGGCA CTTCACGTGT CCTTCCAAAG ATGTAGATGT AACTAACCCC
  AAAGCCTTGA ATTGGTGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61751988	NES17684323	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52034279					SNP	T	T	C	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61751988	NES17684323	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15886918 () rs orientation: forward

Symbol	Name	Function Class
Gli3	GLI-Kruppel family member GLI3	within coordinates
Rr2117	regulatory region 2117	within coordinates
Rr2187	regulatory region 2187	485 bp downstream