rs52034399 SNP Detail

Summary

• ID
  rs52034399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:100853001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT GTGACCTACT AGGCACCCTG
  Y
  CATTAGTCTC CCATGGTGGA GGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss137997060	ENSMUSSNP6784421	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss324138810	CHEV_12_102124952	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52034399					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:100853001 () rs orientation: forward

Symbol	Name	Function Class
Gm36572	predicted gene, 36572	1329 bp upstream
Gpr68	G protein-coupled receptor 68	within coordinates
Rr471362	regulatory region 471362	936 bp proximal
Rr471363	regulatory region 471363	1157 bp proximal
Tssr114718	transcription start site region 114718	861 bp downstream
Tssr117330	transcription start site region 117330	1094 bp downstream
Tssr117331	transcription start site region 117331	1128 bp downstream
Tssr117332	transcription start site region 117332	1148 bp downstream
Tssr117333	transcription start site region 117333	1183 bp downstream
Tssr117334	transcription start site region 117334	1209 bp downstream
Tssr117335	transcription start site region 117335	1284 bp downstream
Tssr117336	transcription start site region 117336	1331 bp downstream