rs52034452 SNP Detail

Summary

• ID
  rs52034452
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91343113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG GTCTTGAAAT TCTCAAGTCA
  W
  AGTTCAAATT TTTGCTAGAT AATTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148555518	ENSMUSSNP4945997	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325277494	CHEV_16_91546470	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52034452					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91343113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8455	CpG island 8455	195 bp proximal
Gm61328	predicted gene, 61328	164 bp upstream
Ifngr2	interferon gamma receptor 2	834 bp upstream
Rr325567	regulatory region 325567	within coordinates
Rr370129	regulatory region 370129	431 bp downstream
Rr370130	regulatory region 370130	21 bp downstream
Rr392125	regulatory region 392125	1872 bp upstream
Tssr139405	transcription start site region 139405	531 bp downstream
Tssr139406	transcription start site region 139406	503 bp downstream
Tssr139407	transcription start site region 139407	823 bp upstream
Tssr139408	transcription start site region 139408	1007 bp upstream
Tssr139409	transcription start site region 139409	1604 bp upstream
Tssr142093	transcription start site region 142093	1388 bp downstream
Tssr142094	transcription start site region 142094	1936 bp downstream