rs52034489 SNP Detail

Summary

• ID
  rs52034489
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20060649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCATGTC AGCTCGTGAA
  TCTCCATTTG CTGTTTACTG TGCTGTTATA AATGGGTAAC AACTAACCCG GTTTTCCTTA
  AGAACTGTCA TAAGCTCCCA ATCGTCCTTT CCCTGGGTTG TAATTACAAC CCCCAAACTG
  GTTTCCTTTC CCTGATGTGC ATGTATGCTC GTTCCATTGC AGGGCTATAA TCCAGCCTGA
  W
  TGAAGGTCAG TTAAATACAG AAAACATCCA GCTGCCCTCC AAGGGCTTCC CAAGTGTATC
  CTGCATGCAC TCAGACCTGC AACCATGGAA GTGGTGGTAG TTACAACTTC TGGCTGAACC
  TGAGAAGCAT CCAGTCTGCA CCTAGGAGGA CTGCCCAGTC TGGGCCCATT GGTCAGCTCA
  TCTTCCTCAA CTTCATTAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52600689	NES15697972	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52034489					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52600689	NES15697972	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20060649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8068	CpG island 8068	211 bp distal
Gm49566	predicted gene, 49566	within coordinates
Map6d1	MAP6 domain containing 1	541 bp upstream
Tssr140349	transcription start site region 140349	625 bp upstream
Tssr140350	transcription start site region 140350	601 bp upstream
Tssr140351	transcription start site region 140351	536 bp upstream