rs52034535 SNP Detail

Summary

• ID
  rs52034535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74270698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCCAAG ATCCAGGAGG
  GAGCACGCCT CTTTAGCAGG ACAGGGGAGG GAAAGCTGTG AAGGGAATAA GGTTAACAGA
  GCTCAGACTC ACAGTGCCTG GTTAGGGAAG GCTTTTTTTT TTTTTTTTTT TTTTTTTTTT
  TATTATTTAT TTCTTGCTGC CTCCTCTTCC CATTCATTTA ACCCGTGGAT CTGGCACTAG
  R
  CTCTCCTTGC ATCTGCTATC TGACTGCGTT TTTCAGTAAG GTTTGTGCTG TGTGTTGCTG
  TAACTAGATG GTACTGACTT TTTCACACAG CGTGTTCAGA AAGGGCCAGG GAGGTTCCAA
  GGTCGCCCTT TCACCGGGTT CAACTGCTTG TCCATGGACT GCAGCATTCT AGTCTATGAA
  GTGAGTGTGT GCCTTCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52662190	NES15474949	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52034535					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52662190	NES15474949	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74270698 () rs orientation: forward

Symbol	Name	Function Class
0610040A22Rik	RIKEN cDNA 0610040A22 gene	582 bp upstream
Cpgi5859	CpG island 5859	834 bp distal
Gm41003	predicted gene, 41003	within coordinates
Rr281645	regulatory region 281645	within coordinates
Slc9a3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	within coordinates
Tssr120348	transcription start site region 120348	1158 bp downstream
Tssr120349	transcription start site region 120349	1133 bp downstream
Tssr120350	transcription start site region 120350	45 bp downstream